ACTB, ADNP, AFF2, AHDC1, ANK2, ANK3, ANKRD11, AP2S1, ARHGEF9, ARID1B, ARX, ASH1L, ASXL3, ATRX, AUTS2, BAZ2B, BCL11A, BRAF, BRSK2, CACNA1A, CACNA1C, CACNA1E, CACNA2D3, CAPRIN1, CASK, CASZ1, CDKL5, CELF4, CHAMP1, CHD2, CHD3, CHD7, CHD8, CIC, CNOT3, CORO1A, CREBBP, CSDE1, CTCF, CTNNB1, CUL3, DDX3X, DEAF1, DIP2A, DLG4, DMPK, DNMT3A, DPYSL2, DSCAM, DYNC1H1, DYRK1A, EBF3, EHMT1, EIF3G, ELAVL3, EP300, FMR1, FOXP1, FOXP2, GABRB2, GABRB3, GFAP, GIGYF1, GIGYF2, GNAI1, GRIA2, GRIN2B, HDLBP, HECTD4, HIVEP2, HNRNPH2, HNRNPU, HRAS, IQSEC2, IRF2BPL, KANSL1, KCNB1, KCNQ3, KDM3B, KDM5B, KDM5C, KDM6B, KIAA0232, KMT2A, KMT2C, KMT2E, LDB1, LRRC4C, MAGEL2, MAP1A, MBD5, MECP2, MED13, MED13L, MEF2C, MEIS2, MKX, MSL3, MYT1L, NAA15, NACC1, NBEA, NCKAP1, NCOA1, NF1, NIPBL, NLGN2, NLGN3, NLGN4X, NR3C2, NR4A2, NRXN1, NRXN2, NRXN3, NSD1, NUP155, PACS1, PAX5, PCDH19, PHF12, PHF2, PHF21A, PHF3, PHIP, POGZ, PPP1R9B, PPP2R5D, PPP5C, PRR12, PSMD12, PTEN, PTK7, PTPN11, RAI1, RELN, RERE, RFX3, RIMS1, RORB, SATB1, SCN1A, SCN2A, SCN8A, SETBP1, SETD2, SETD5, SHANK2, SHANK3, SIN3A, SKI, SLC6A1, SLC9A6, SMARCA2, SMARCA4, SMARCC2, SON, SOX5, SPAST, SRCAP, STXBP1, SYN1, SYNGAP1, TANC2, TAOK1, TBL1XR1, TBR1, TCF20, TCF4, TCF7L2, TEK, TLK2, TM9SF4, TRAF7, TRIM23, TRIO, TRIP12, TSC1, TSC2, TSHZ3, UBE3A, UBR1, UPF3B, USP9X, VEZF1, WAC, WDFY3, ZBTB20, ZMYND8, ZNF292, ZNF462